Archive for the ‘Science: Bio/geo/chemistry’ Category

Scientific research of oil spill hampered, or not?

Thursday, August 12th, 2010

The University of South Florida’s College of Marine Sciences keeps reporting running into opposition from unexpected parties in its attempts to investigate the oil spill in the Gulf of Mexico.

view from USF Marine Science's KORC building overlooking Tampa Bay; the white rectangles in the water are merely reflections of research papers in the window glass

It had previously mentioned encountering difficulties in obtaining samples. (See USF scientists: BP not helpful in researching oil layers in the Tampa Tribune on June 8, and USF professor: BP’s resistance is ‘unsettling’, WRBL on June 9.)

An article published in the St. Petersburg Times on Tuesday, August 10 states that NOAA and the Coast Guard told the department to shut up about its research findings. Apparently, it’s not the only local university with that kind of experience either, as an oceanographer at the University of Southern Mississippi received the same treatment.

The article is available online at: http://www.tampabay.com/news/environment/usf-says-government-tried-to-squelch-their-oil-plume-findings/1114225.

Yet today, the same paper reports that the dean of USF’s College of Marine Sciences now classifies it as “old news” in a letter to the editor.

KORC building and other buildings of USF's marine science complex, seen from across the adjacent airfield

USF’s College of Marine Sciences is based in St. Petersburg whereas the main campus is in Tampa. Today, August 12, is also when the decisions about new oil spills research projects are made, at the same location. Ten million dollars provided by BP will finance the selected projects.

On May 17, I blogged on the oxygen depletion (30%) apparently seen near some of the gushers at the time and on what Samantha Joye, marine science professor at the University of Georgia, had to say about that.

On August 1, Samantha Joye wrote on her blog:

“However, it’s likely that a great deal of oil is still out there in the Gulf of Mexico’s waters, it’s just no longer visible to us.”

She added:

“The fact that this oil is “invisible” makes it no less of a danger to the Gulf’s fragile ecosystems. Quite the contrary, the danger is real and the danger is much more difficult to quantify, track and assess.

In other media, scientists voice similar views. Pamela Hallock Muller, also of USF’s College of Marine Science, comments:

“There are too many unknowns at this moment to say that it’s not a problem anymore because 75 percent of it can’t be found.”

Anna Armitage, a professor at Texas A&M University, says:

“But, when you look more carefully, when you look at the soil characteristics or the below ground characteristics or the animals that live in those marshes, those components can take literally decades to recover. So just because the plants are back doesn’t mean the marsh is healthy again.”

Carbon-covered labware

Tuesday, August 3rd, 2010

I just ran into this bit of research that is dated (2000), but still pretty cool. If you do a lot of lab work, you’ll be interested.
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What Craig Venter is doing for the world

Sunday, May 23rd, 2010

“Don’t leave. It’ll be worth the wait.” That’s what Craig Venter said when he briefly popped out of the Sheldonian Lecture Theatre in Oxford on October 25, 2007. It turned out he was right.

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YES YES YES Craig Venter has done it!

Thursday, May 20th, 2010

I knew it, I knew it, I knew it.

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Biominerals

Sunday, March 7th, 2010

This afternoon, an article in the current issue of the magazine Elements – published by an international consortium of scientific societies for its members – drew my attention. The article that caught my eye is by Patricia Dove, on the development of skeletal biomineralization in the history of life on earth.

I first read about biomineralization some fifteen years ago, when I was working in the States. What I read, about the alternating growth of layers of oriented minerals and layers of organic matrix,  was entirely new to me, and I found it fascinating.

The research group I was part of at the time even had a little hobbyhorse in the area of biomineralization, to do with the strontium phosphate celestite, produced and rendered stable by small marine organisms called acantharians. These organisms made the impossible possible. That’s like magic!

So let me offer you a little appetizer extracted from and inspired by Patricia Dove’s article, in case you are not familiar with the topic of biomineralization yet.

By the start of the Phanerozoic – about 542 million years ago – many types of organisms had acquired this capability of influencing the time, location and morphology or mineral growth as part of tissue formation.

Skeleton formation is probably the best-known form of biomineralization. However, besides structural support, biominerals can also serve functions like filtration, grinding and cutting, light harvesting (part of photoreceptor systems), and magnetic guidance.

Most skeletal biominerals are carbonates, but there are also skeletons that rely on phosphates or silica. To date, more than 64 biomineral phases have been identified, including oxides, hydroxides, and metal sulfides. They are always, as it’s so nicely put, intimately associated with organic macromolecules such as proteins and polysaccharides.

Some organisms grow alternating layers of oriented minerals and organic matrix, and they do this with good reason. Targeted incorporation of 1 to 5 wt% of organic matter to create a composite with the carbonate mineral aragonite, for example, (pictured above as needles of a few millimeters in a German lava) can result in a local fracture toughness that is 1000 times higher than that of pure aragonite.

Bones are an example of the use of phosphate in skeletons; they consist of a composite of phosphate and collagen. The phosphate mineral in bones is apatite, shown below as an abiogenic mineral (and with thorium partly substituting for calcium as the sample is from La Celia in southeast Spain, from a lamproitic lava flow; the crystal size is about 1 cm):

Topics in the coming issues of Elements are the following:

  • Sulfur – April 2010 (Vol. 6, No. 2) – including one article about sulfur on Mars;
  • Metamorphism and the role of fluids – June 2010 (Vol. 6. No. 3) – including one article on metamorphic fluids and global environmental changes;
  • Atmospheric particles – August 2010 (Vol. 6, No. 4) – including an article airborne particles in the urban environment;
  • Thermodynamics of earth systems – October 2010 (Vol. 6, no. 5) – including an article on the effects of ocean acidification as a result of CO2 dissolution;
  • Sustainable remediation of soils – December 2010 (Vol. 6, no. 6) – including an article on assisted phytoremediation and one on the use of nanoparticles for remediation.

If you are interested but currently don’t receive the magazine, consider a membership in one or more of the following societies, of which it is a joint publication:

the Mineralogical Society of America, the Mineralogical Society of Great Britain and Ireland, the Geochemical Society, the Mineralogical Association of Canada, The Clay Minerals Society, the International Association of GeoChemistry, the European Association for Geochemistry, the Société Française de Minéralogie et de Cristallographie, the Association of Applied Geochemists, the Deutsche Mineralogische Gesellschaft, the International Association of Geoanalysts, the Società Italiana di Mineralogia e Petrologia, the Polskie Towarzystwo Mineralogiczne (Mineralogical Society of Poland), the Sociedad Española de Mineralogía (Spanish Mineralogical Society), or the Swiss Society of Mineralogy and Petrology).

Iron and the oceans, in Science Magazine

Tuesday, February 9th, 2010

Effect of Ocean Acidification on Iron Availability to Marine Phytoplankton, in Science Magazine

Associated Perspective by Bill Sunda

NOC’S number 1 in the world in oceanography

Friday, December 4th, 2009

According to the Times Higher Education, the National Oceanography Center in Southampton (NOC,S) is currently the world’s number 1 when it comes to oceanography. This is based on publications and their influence, however, so organizations that take more risks in new research or work in niches would likely score lower.

http://www.soton.ac.uk/alumni/newsletter/nov09/oceanography.html

http://www.timeshighereducation.co.uk/story.asp?sectioncode=26&storycode=409181&c=1

It is placed 9 in the list of top institutions in geosciences as published on 19 November 2009. I am not surprised to see that the University of East Anglia – which I mentioned on this blog before but have not yet visited, I regret to say – has landed in the 5th position.

NOC’s was my most recent academic affiliation.

Cyanide and sewage spill Trent River, UK

Thursday, October 8th, 2009

An unknown quantity of cyanide and untreated sewage ended up in the British Trent somewhere between Stoke-on-Trent and Yoxall and created a “serious pollution incident.”

Thousands of fish were killed. The Environmental Agency pumped oxygen into the water overnight and today to correct the situation.

Last month, a local water company (Severn Trent Water) was fined for a sewage spill in the Trent.

Source: METRO, October 8, 2009, page 21

Water on the moon

Thursday, September 24th, 2009

See Science. Just a little bit, but still…

Mary Rose, what have you been collecting?

Thursday, August 20th, 2009

Fossil fuels and Henry VIII’s favorite warship, the Mary Rose, may have something in common: the way they acquired their sulfur content. For recovered shipwrecks of archaeological importance, that sulfur content can have serious consequences when the sulfur is oxidized and forms sulfuric acid. Read more.